Autonomous Hexapod

Hi I am using a BH3-R with an SSC-32 and a Bot Board II. Is it possible to upload a program i did in Visual Sequencer for an AH3-R to the BH3-R, but for it to do it autonomously? Maybe by getting the Basic program for it using the Powerpod and program the BH3-R using The Basic Atom IDE. The AH3-R is not autonomous. The AH3-R only has an SSC-32. Can this be done? Do i have to change up some wiring as i have it set for moving using the wireless PS2 controller?

Thank You.